GgaINT0077019 @ galGal4
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62708778-62710103:+
Coord C1 exon
chr4:62708778-62708801
Coord A exon
chr4:62708802-62709980
Coord C2 exon
chr4:62709981-62710103
Length
1179 bp
Sequences
Splice sites
5' ss Seq
ATAGTATGT
5' ss Score
4.41
3' ss Seq
TCTGTCCTCTCTTTATTTAGGTG
3' ss Score
12.63
Exon sequences
Seq C1 exon
CTTTCTCATATTATGTGTGAGATA
Seq A exon
GTATGTTTGTTTATTTTTTTTTTCAACAGTGAGGCAGCTTCCAACATTATTTGGTTCAAGCTTGACTGTTGATTTTGAGATACTCCTGTGTTTGATTTATTTTTGACCCTCCAGCTGATATTAGTGGGAAGGATCAAGAAGGATGGGCTCAAGGGGAGGGTATGTGTCTGAACAAGCTTTGCCATTTTTAAAGAAGAGATGTAAAAATAATTTCCTCAGAAAAGCTTGTAGGCATGACCCCAGTGCTAAAAATATAACTACTACACATAGCACTAAAGAATCATAGAATCATAGAATGGCCTGGGTTGAAAAGGACCACAATGATCATCTAGTTTCAACCCCCCTGCTATGTGCAGGCTCACCAACCACACCAACACAACCACAACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTCCAGGAATGCGGCATCCACAACCTCCTTGGGCAACCTGTTCCAGTGCGTCACCACCCTCTGGGTGAAAAACTTCCTCCTAATATCCAATCTAAACCTCCCCGTCTCAGTCTAAAACCATTCCCCCTTGTCCTATCACTATCCACTCTGGTAAACAGCTGTTCCCCCTCCTGTTGATATGCTCCCTTCAAGTACTGGAAGGCCACAATGAGGTCTCCCCAGAGCCTTCCCTTCTCCAAGCTAAACAAGCCCAGTTCCCTCAACCTTTTCTCATAGGAGAGGTGCTCCAGCCCTCTGATCATCTTAGTGGCCCTTACTAAGTGGATTCAGTGGTTCTTCTGGCACTACTCTATCTTGTGGCATACTTCTCTATTAATTTCACTGTAAGAACAGTTTGGCAATGAAGTAGGTCACCCAGACAGGTTGGACAGGCTCCATCCTTGAAGATTTTCAAGACCTAACTGGGTAAAGCCCTGGGCAACCTGATCTAACCTCAGAGACCAGACACACTTGGACCAGGAAACTGGACTCAAGACCTCCTGAGTTCCAACCTGAACTGTCCCGTGAATCCTAAGTTCTATTGCTTGTGAAAGTAGATCAATCTCCCATATATTTGTGTACTGTTTAGGTGGTAAACATCTATCTTAGCATGACAACACAGTGTTTGTAATGGACAAAATATGAATGTTGATGTGCCACTACAATATACTATGCCATAGCCTATTTTTTTTCTTTTTTTTTCATCTGTCCTCTCTTTATTTAG
Seq C2 exon
GTGGAAAATGTACGGTTACTTGATCGCTTGTCTTCAAGAAAAGCTGCAGTGGGAACCCTGTACTTAACAGCTACTCATGTCATATTTGTGGAAAATGGTTCTGAAACTCGTAAAGAAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116053=Vps36_ESCRT-II=PU(3.2=25.0)
A:
NA
C2:
PF116053=Vps36_ESCRT-II=FE(63.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]