DreINT0099948 @ danRer10
Intron Retention
Gene
ENSDARG00000035322 | myh7bb
Description
myosin, heavy chain 7B, cardiac muscle, beta b [Source:ZFIN;Acc:ZDB-GENE-090311-5]
Coordinates
chr23:18798312-18798639:+
Coord C1 exon
chr23:18798312-18798339
Coord A exon
chr23:18798340-18798542
Coord C2 exon
chr23:18798543-18798639
Length
203 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TAAATTTTGTCCATGCCTAGCGG
3' ss Score
4.71
Exon sequences
Seq C1 exon
ATCGTGAAAACCAGTCAATGCTTATCAC
Seq A exon
GTAAGTGACCATCCAAGTCATTCTAATGTTTTATTATTGCAGAATGATCTGAAATCCTACTCTTTGCTCATTATTTAATCATGAAGCGGTATAAAAAATGGGTTTTAACCCTTTTGAAGATATTTCTTTTTCCCTTTTTTGTCTTGCTTCTTGGATTTAATATTGTTTCATGTTTATTTCACATAAATTTTGTCCATGCCTAG
Seq C2 exon
CGGAGAATCCGGTGCTGGCAAAACTGTCAACACGAAACGTGTAATTCAGTATTTTGCCATTATAGCTGCTCTTGGCGAAGCAGGGGGCAAAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035322:ENSDART00000137438:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]