DreINT0140643 @ danRer10
Intron Retention
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35292578-35295271:+
Coord C1 exon
chr20:35292578-35292695
Coord A exon
chr20:35292696-35295153
Coord C2 exon
chr20:35295154-35295271
Length
2458 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TTTCTTTGTATAACCGGTAGAAT
3' ss Score
4.31
Exon sequences
Seq C1 exon
AGAAATGTTGAAAGATCCTGAGAGGAGGAACAAGCTGATCTCAAATCCTACAAATTTTAACCATGTGGCTCATATGGGACCTGGAGATGGCATGCAGATACTCAGAGACCTGCCAATG
Seq A exon
GTGAGAGATCTGCCTACCCCTTTAAAAGAATAATCTGGGTTCAGTAAACAAGATCAAACTCTGCTGATGGCATTTAGCCTGTGTTAATTACTACAAAAATAAATATTTCACTTGTTTCTTTAGTATAGCCAGAAGACCTAAACAGTTAGTGTGTCAACATGATTTTAGTGTGACATTTGTTGTGTAAAGATAAATATTTAGTTTGTAACTAACTAATACATTCATCTTTTTGCTAAAAGGTAATTCTCCTGAAATCATCCACAGTGTTTTTTTTTTAAACTATAATTTTTTTGTGGTAATTAACATTGTTCCACAAATACTGTTTGATCTTAGATTATATTGAACTCTGAATATTGCTTTAATACATGCACATTTCATTCTGCTTTGTATTTTTCTGGTCATTTATCAAATCACTGTCCAAGTTTGGTTCACGCACTACCATTCAAAGGTTTGGATTTTTTTTTTTTTGGAAAAAAATCTATGTAAATATAGTATATTAAATTGATTTAAAGATATGTTATTTAAGCATCAAGTCTGCAAATTATAATATTTCTGAAGAATCAAGACAGCTTTGGATCATAGCAATAAATAGAATAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTTTTTTTTATCAAATTAATCTATTTCGATGTAGCAGTATATACAACTATGCACTATTTCCAAAAAGATGAGGTTAAATGTTTCTCTGCTGTTTCTTTTTTGTAATGTAAAAATGTAAATGTAAATGTAATGTAATGTGTATTTATATAGCGCATTTATTGTGTATGGCCATACACCCAAAGCGCTTCACAATCATGAGGGGGGGTCTCTCCACACCACCACCAGTGTGCGGCATCCACTTGGATGATGCGACGGCTGCCACAGGACAACGGCGCCAGTGCGCTCACCACACACCAGCTATTGGTGGAGTGGAGGGACAGTGATAGAGCCAATTCGGTGGAGAGGGGATGATTGGGAGGCCATGATCGTAAGGGCCGATAGAGGGACTTTGGCCAGGACACCGGGGTTACACCCCTGCTCTTTCACGAGAAGTGCCTTGGGATTTTTAATGACCACAGAGAGTCAGGACCTTGGTTTAACGTCTCATCCGAAAGACGGCGCCCACTGACAGTGTAGTGTCCCCTTCACTTTTACTGGGGCATTAGGACTCACACAGACCACAGGTTGAGCGCCCCCTGCTGGCCTCACTAACACCACTTCCAACAGCAACCTAGTGTTCCCTAGTGGTCTCCCATCCAGGTACTGACCAGGCTCAGCCCTGCTTAGCTTCAGTGAGTAACCGGTCTTGGGCTGCAGGGTGACATGGCTGTTTCTCTGCTGTTTCTTTTTTACATTATACAAAATCAGATGGATAGGATAAACAAAATCCAATAACAATAAATAATACTATTATTAACAATAGTATTTTTTATTATTAAAATATTAGGCGTATTAAAAAATGTTCAGGGTTTGTTCTTGGACCAAAGTGTCATGCAGACTTGGAGAAAGTCTACAGGTTTCTGGTGTGGAAAAAGTATGTAGGAGATTTTGTAATAACATTTTCCTTCAAAAGAGAAGAGTCTTTTGTTTTTTTTATCGCCACAATTTTTTTTTTCCCATAACATTAATATAATTGATGTGTGGTGCAGTGGCACAGTGGGTAGCGCTGTCGCCTTACAGCAAGAAGGTCACTGGTTCGAGCCTCCGCTGGGTCAGTTGGCATTTCTTTGTGTAACTTGCATGCACATCTATCAATATCAATATCAATGTTGGTGTGGGTTTCATCTGGGTGCTCTGGTTTTCACTATAGGTAAATTGGATTAGCTAATTTGTCCGTAGTGTATGTGTGTGAATAAGTGTGTATGGGTGTTTCCCAGTAATGGGTTGCAGCTGGAAGAGCATCCGCTGCGTAAAACATATGCTGGATAATTTGGCAGTTGTTACGCTGTGGCGACCCCAGATTAATAAAGGAACTTAGCCGAAAATAAATAGCTTTATCACTGGGCACTCTTTCCCATTTAGTATGAAGTATATTTTTCTATAACATTTATTCTAAGGCCTTTATAAAATGTAGCAATGACTCCCTTGTACTGTTAACGTCCTACTTATGTCAAATAAATGCAGCTTTGATAAGCAAAAGCAACTTCTTTCAGGAGTATAAAATCCTGTTCCAAACTTTTGTACTGTAGTGTACATCAGTACACAGTTCTCTGTTCTCTACATTCACTAATACATCACAATTCATTTACAGGTCCTCAATTAATATGTTCATTCATGGCATGGTAATATCTTGAAAATCACTATGTAACCGTCATAGAATGTTTTCATCATCTCATGTCTGCCGCACTCATTGCATGTTTGTGTGTCCCTGCTCTGTGTGTGTATGTGTGTGTGTTGTTTCTTTGTATAACCGGTAG
Seq C2 exon
AATGTACGTGCTCAGGACAACCGTGCTGGATTCAGCGGCTCCGTCAGCATCCCCTCCATTACAAAAAACAGAGCAGAACCAGGGCGATCCATGAGCGCAAGCAGTGGCCTAGGAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464:ENSDART00000040456:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=52.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]