MmuINT0032852 @ mm9
Intron Retention
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:182081291-182089854:+
Coord C1 exon
chr1:182081291-182081408
Coord A exon
chr1:182081409-182089736
Coord C2 exon
chr1:182089737-182089854
Length
8328 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TCCTCTCCTTTGTGTTTTAGAAC
3' ss Score
11.52
Exon sequences
Seq C1 exon
GGAGATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTAAAAGACCTGCCCATG
Seq A exon
GTAAGAGGCGTGAAGAGCGGTGTGAATATGAACGGTGTGAGGAGTCAGGGCCAGCTGCCGGGGAAGGATGTTCACGTAGGCTCACATGCATGCTCTGCTTCACACACACGACACAGTGCCATCTGATGGACGAAACCTAAAGCTCAGAAAGCTGACAAAAGTTCTTAACCCAGAAAAGTTTTCCATTTGCTAATACAAGTTTGCTAGTGTTGGTGAAAGAAAGCGCTGTATTTGAAAGGTTCTGTGACAAATCCTAGATGCAGCTCCCAAAGCTCTAAGGTCTCAGTCAGCTGAATGCAGGTGCTTGGGTGTTGTCTCCTCGGAAGCCCACCCAGGCTCATCACTCATAGTCACACCTCTCGGCTAAATGTGAAATTCAGTCTGCTCCTTTGCGCAAATCCAGGCATGTCTCCTGCTCAATTATATGTGAAAAGTACCACACCGGAACACTGTTGTACTTTAACAACATGAAGATTGCATCCACAGACCCATTATGCTGAGGTTAAAATTACTAGTGGAGTTGGCTAAGTCCCCAGGCGCTCTGCTCCTGACGTGTCAGTGTCACACACTCCTAGCAGGCCACTAAAATCCAGAGGGACCCTTTGATCAGCAGGGTAGCTGCTCAACTGGGCAAAAGAACTTCAGAATAATTACTATCTTATGACAGTTTTGGAGACAACTGTGAATACTGACCGTCATCTCTCCTAAGGACATCTATCTACATTTCATTGGCAACACGGTGGTAGGAGAAAGGAGAGAGCAGGGATAAAGTGTGCTGTGTAATCAGAACTGTATTGTCAAGGTTAGCCTATAAAGGGGTCTTTATTTATTCCTGGAGAAAAAATAAGTCTACATTCATTTCAATCAAAATATTTGGTTGTAAACATTACAATCACATAACTGTGCTTTCTTGCTATTTTCACATCTTTGGGGGTGGAGTGGTGGTGGCCACAGAAATATTCCTTTTTTGAGTTCACATTATTCACATTCAAAGTATTCCTTTGGGGTCTGTTAGCCTTGGGATATATCAGCTGTGCTGGGTAAATATAAAGCATACACTATCACACTGTATACGCTGTAACTAGATCACAGTGAAGCCCAGCAAGAAGCTCAAAGTCAAGCATGTTAGACTCAGAGCTGCTGTGCGCGTTGCTGGGTTTGTAAGCTTTTCTGCTTCCCAGCTTCTGCCTGGAGCAAGAGCACGGGTGTCTCCATTTCCCAGTGGTAACATTGCTCCAGAGTCCTCGACTGCCATGCTGTCATCTGGGCAGTGCACATAGCAGGGTCCTGAGGGCAGAGCTCTGCCATTGCTGTTCTTGCTATTTCGTTTTTCTGAAGGGAAGTTACAGCCCAGGCACACAGTGCTTTAGTAGAGGGGACTGTATGAAGTGTAACAAACAGTTACCTCGTCATAGGAGAGACCGAGAACAGTGCACTGTTTTAACTGAATTTTTGATCATTTTTTCCAAAGTGTGTAGTATTGAGGGATGGAAAGACAACCAGCTTTAGACCTAAAAGTATTTTGTCAGATAGCATGCCAGCTAAATCAAACCAAGGTTCTGATAGGTATTAGCCTTCTAAATTAAAATCATATTTGTAACTATGTAAAAGGAATTGTAGAAAATGTTTTACTTATACGCAGCGTTTCCCTTAAGGTGGTACAATCTCAGGATTTAGTCTTGCTCTGCTTGGGTCCCACCAGGTGAAACCCTGTTTCTGTCCTGAAGGTCTTCCCAACCTTCACGATGGAGTGTGACCCTCGGAGTCTAAATCAGCAGTTTAATAGTGTAAGAGACTTTAAAGTACCCCTCAGCTTTACTCTTTCTGTTTGGTTTGGTTTGGTTTTTGGTTTTGGTGGGGGTTTTGTTTTGTTTTTGTTCCTGTTTTTTGAGTCAGGGTCTTACTATGTAGCCATGTCTGACCTGAAACTCTCCATGAAGACTAAGCTGGCTTCAGACTCATAGAGATCCAACTGGCTCTGTCTCCAGAAACAGAGGCCTGTGTCACTGCACCCAGCCTAACTAAACTCTCTCCCTCCAGTCTCTTACCACTTGCATCTTTTGTTTGGAGACAGAGGATTTCGTTAGCTGGCCCTGGCTAGCCTCAAATTCACTATGTAGCCTAGGCTAGCCTCAAATTTGAGCCTGTCTTCCTCCTGCCTCAGCCTTCTAGGTGCCCCAGGTGTCTGTCACCATACCCACCAGAAATTTGTGGGTTTGCTAATATTGCTAAAAAGATTTTTGTTATTAAGCAAAACAATTTCAGATGATATTTGTCATTCATCCACCAACTGGCTCCATCCATATGACCCTCCATGCTGGCTGCTGATTTCTAACTAGACTGTTAGTTTGGGGTATTTGTCATCACCTGGTTTTGTTAACTCGACAACCACCTCTCCACAACCCCAGATTAGTCCTTTTTCATACCAATTCAGTTGGTTTTTAATGTGCCTTATTCTTTTAATGTTTAATTATTGTGTAAGATAACATTGTTCTATTTCCAGGCTGAAGTGTTGTGCGTTTATGAGACTGTTCCTCCATCCTCACATGTCATAGGCAGCAGAGTTTTCCTGTTATTTCCTGTTATTTCCACATGACTTTTCCCATCTCACATGTGGAGGATGTAGTTCTCTGAAGGCATTACTTAACCCTCTGACGCACGCTTCTTGAGCATGTGCCCTGTGCCCAGGCCTGGGCTTCTCTAGGAGCAGACGCAGGGAAATAGCGCAGCACTGTGTGTGTCTGTAGCAGTGCTCACAGGTAACAAGAGCTTGGGTTTTAATGTAATCTCAACTCTGTGTGTCCTTTTCAGTCAAATGGAATTATGAATTATCCCTCTCCCTCCCCCCTCCAAAAACAGATGAATTACATTGATCTGGCAACGTATATAAGCGCTTTCAAGTCCCAAAGCTGTGTTGCTGCCTGCAAAGAACATGGACCCTGGATGTTTTTATGTCTCATCATAAATAAGTCAATATCATGTTCCTGTGAAATACTTAAGAGCTTAGAAAGACTTAAAAAGCTCTTTAGACGTTAACTCTGCTTCACTTGTACCAGATATCCAGAAATAACAGTGCTTCTGTCTTAAATATGGATGGGCCAGTAAGCTTGGAAGAGTCTTTTTCTGACCTCTTGTATCAGATGTGAACCTTCCGTCTCCATCCTCGTGAGTGGAGAGAAGATAAGCAGTTAATATAAGATGGCATTCAAGTCTTAAGAGAGAGACTGAGTTAGTTTTCTTGAATCTTTATCATTTATATACCTGTGGTTTTTGTTGTTGTTAAGTGATTGCTAGACATACAGGAACATTTTTCTCCAACATAATGCAAGAGTAATTTATCACTGTAAGGTTCGTTTATCACCATATTCCTAACACAGTACATTTTACCTGTCTCTAAAGTTGTTCATGACCACAATATACTGAACCCAATAACCTCTTTAAGAAGTAAGTTTGCTTCCTGAGCCCAGAAATGATACAGTGTTTCCTTGTTGTATATGCATGGAGGGCCGCCTGGACTCAGCTCATGACACCTTCCCTCCAAAAAGATAGTTTTCTTTCTTAAAGTCAAAGATGATAGATAGGTAGGTAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAACCTTAGAAAACAGTGATTTTATTCACGTTTCTAAAATAAATCAACTGTCATATATAGAAGCCTTTCTTTTAGGCTTAGATAAGTCTTGAGGGATGGTGTGCTCTGGAAACACTCTTCTTCCAGAACTGAGCTAGGGAGAATCTCCGTTATAGGAAATGGCTGGCCTCTCAGTGGCTCTGCCCACGTGTTCACCCGGAAGCATTTATCAGGTGATGTGAAACCTTCTCTGTAGACGTTTTGTAACTTCATTATTATATATAGCCTTTTAAAGAACATATTTGAACATTGAAAGCAAAATTTTCCCTTGTTGAAAACATGCTTGTTCTTTGAGCTGCTTAGAGATAAACCAGGACTAGCACAGCCTCCAAATCTCAGCATCTTTGTTATAAGGAAATGAGCTCACTAAAGACCAGGACATAGCATAAATCAGAACTGAGAAACAGCCATAAAGTCGAAGGGTGCAGGTTTGCACTTTGCATTGGAAGTGCTCTGGGGTTCCTCCCCCTTTCTGTAGCTTTCTTGCTACTTCTGTGCTTGGAGTTTTGGTGTTTTGGAGAGATTTTGCAATGCTTAAGAAAGTCCTGAAGACCCTCAAAGCCTCTGGGACCTCTAGAAGCCATGCTGCTACTCGCTCAGTTCCGGTAACATGGGGATGGTGTTATCACAAAATGATCTTTTGAAAATCTGCTGTTTTGAGTAACTGATTACAGAATTTAATCCTCTAAGGCCTGAAAGAATTTCACTGGCACTAGTTCTGAGATCTGCCTTGTTCTCCGTGTGTGTGTTGTCTGGTGTCACTCACCCTGATCCATCAGTGTCACCTTACACCATTTTTTTTCTTTCTGTTGTTTTGATAGCCAGGTTTCCCTTATTCACCCCCTCATCACCACTCCGGCCTGATCTCCTCTCCGAGCAACTTTGAGCACATCTATCACATGACTGTCACTTCTGCTGAACAGTTTCTCTCTCCTGAGTCCATAAGCCCTGGGTCCCCCCCGTCCCTGCGCTCTGCCCCTGGCACACCACACTCTGTGACTCTGAGGGTATGAACAGCTGAGTCGAGCTAACCTTGACTAACTAACGGAGTGTGCATTTTCTAACCACTGAGGTGGCGCCTAGAAGAGTGGTTAGCCTTTCTTCCTCCTCAGCTGCCAGCTTCAACTACTTTCTGACTTCTGTTTATCCTCCTCTCTCTCCTCTTCTCAGTCTGTCTTGTTGGATAGAGTTTTCCCATTATGGTATTTTCCATTCTGGATACCATGTTAAAACGAAAACCACCCAAACAAAAACAGCCCAAACTGGATTTTATTAAAACACACAGAAAAAGAGCTCCCTGAATTTCTGAGGTTTTTCTTTTTTAGCTGCTCTTTACCCTATAGCCACTTCAGGTCAGAGAAATGCTTTATAGTTGATGAGATTATGGTCATTAGAGTTCACCCATAGTCCTATCAAAAGTCTCCAAAGTAATGCTGTAAATAACAAGCACGTAACAGGAAAAATCCCAAGTTAAAGTCGGGTTTTACAAATCTTTGGGTTGCTGATGTGGATTTAATTGCAGCCTAGACACAAGAAGAAAAGTTAGGAAGAACGGAAAAGAGGTTGCTCCACTGCTGAACGGGTGCAGTGGTCCTCTCCTCCAGCCCATGCCGTGTTACCATGGCTCATGTGCCGAAGTGGCCGTTAAAATGTCTAGCCTATCAAATAGTTTCTGTGTGTATGAACATTAAGGGAAGCTAATTTTATGAATATGAAATTATTTGTATTATACCATGCAAACTTATTTTTTATAATGCCCCAGGTTAGTAAATTAGTAACATCGACTTTTAAATTTTGTAACATAGTAATTTTCCAGTAAGAAAATTCGAGGGATTAAAAGATTATTTTTGTTCTTATTATCAGATTTCTTTGATAAAGTAAATAACAATACCATCTGAATGCCTTGCTTGATAGAATTACCTTAGTTTGCTTGGCAACTGGAGATGGATTCCAAGGACTCCACAGTCAGCAGGACCTTGCTGTGAGAGACACTGCTTGCTGTAGCTTGAGCTGAGTGGTGCCACACAGTGGGAAACTACCTTACGCATCATTTTAACTAAAAAAGTCCAAAATCCTGGGTTTCTTGTTATATTCTAATGGAGTGTATATCATTTGACTAAGTGATAGGCTTTTTATATAAACACTTTTCTGTTTGTCATTCCTTTAGTAGTGTAGTTTCAGTTGTAGTTACTAGCATGCTTTGGAAGCTTAGCCTCCATTGTTTGCTCTAGCGTAGGCTTATCATATAGAAGAGAGAGCAGCCCATCTTCTGAGCTGTGAAGTGCAGAGTGACTGGCAGTTGCTGTCTCCAAAGACCCTCTTGGCCTTCTTACACACACTGCTGTGTGTCAGAGGCTTGCTCCTGTGTGTGCAGATGCTAAAATGCTGCCTTTGACTGTCTTGACTTTCTTTTTTTTTTTTAATTTTCTTAGATAAAATAAGGCAAAAACACTGCACAGAATTACATGGACTTTGCAGATCTGGTCTAGGAACCAAAGTAACAATGCAGATTTGCTTCTCTTGGGGTTGCAGGTGTTTGGGAAAGCCCAGTGCGCAGACACATCCAGAGCCATCTCTCCATCATGGGGTCTATGATCACATAGTGACTGAGTGTCCAGTTCTAGACTTCTTAGCAACCCAAATAATTGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAACCTGGTTTATAGAATGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGGAAAAAACAAAACAAAACAAAAAGTTAACTACACTACTTGATTTCCTTCTTGCCTCTTTGTTGTTTCTGCCTCTTCCTAGATCCTGTTTAAATCATTTGATCTTTGCCTTACTGTAGCAGAGAGGCAGCTGTCCTTTGATAAGTGTTAGCATATAGGTTAGCTTAGTAAGAACTTTAGGAACTGGGGGCTATGTCATGGCTCAGTTGCTAAAAATGCTTGCCATCAAACCTGACAACATGGGTTGGAACCCCAAAACCTACAGTGAGGGAGAGGACCATTGACCACCTGTATGGCACACATTTGCTCACATTCACACACACACAAACTCGCACATCCCACACAAATAAATAAACATTTAAAAGAAAATGCAGGTAGGAAACAGCAAGTTATTAGTAGTATCTGATGAGTTAACAGGAGAATTGGCCTCTTTATGATCATTATCACCCAAATACCCCACAGTCCAGGTGTAGTCTCTTGACAATGAGGAAAAAGCATGTTTAATGAACTAATTAATGCTGAGGAAACTACTGGCTGGTTAATGTATTTCCCAGTCATTTTGATTAATCTTGACCATCATGGGATATGCTGAGTGTAGAAATAAAGTGGAAGTGAGATGGCATGGTGGGTAAGGGGCATGCTGCCGAGCCTGTCCTCTGACCTCCACATATGTAATGGCATGATGTGTGCACACACACACACACACAAACAAAACAAACAAAGATCCCCAGGTCAGCTCCTCTCAGAAAAGCAGCGCATGCTAGCTCCATCAGACTTGCTTTTCTTAACTAATGCATTCTCATTCTTCAGGAAAGTCATAGGGTTGGAGTTTGGACTACTTTTTAATAAAACTATTTGTATTTTCTCAACATCTGTGTAATGCATGCTCATTCCTCCTAGAAGAATTCTGATGTAATCTAAAGGGAGGTTATTGATACTGATGCTCACAGATAAGCCATGTGAGTCGTTAGATCAGGGCAGGAGAGCCACATAGTGGGACAGGGCAAGTGCTTTGCTCCTGCAGATGTGGCCTCTGTGATTCTCAGAAACCCAGGAGGCACATGCTAGCCTGAGTGCTGAACAAGCTAGGGCCTGCTGCCCATAGATTCCATAGTGCAGACACTGAGTGCTCTGTTTCACTTCCTGCCCCACCTCCAGCCCCCACCCCACCTTTGCCTCAGAAAATATTTGCAAGAAGGTGGGACCATATCTACACAAGAATAAAGTGTTGTAAAAGATAAATAGAAGTTAGTAACGTGGCCTGTGTGGTCTGCCCACTCTAATATTTAAGAAATTGATTCAAATGTCTGCATTCTCTGGGTTTTGCTCTGCCCTGCACCCCTTTTCTAGTTGAAAGCACTGAGTAGGGCAGGTCCCAGACTCATGCTCCCTGGTACAACTGTGACTGAGCTATGAAGTGCAGCAGGAGGAAGCTTCATGTTCCAGAGCTAGTAAGATTCATGAACATGACACATGGCGCAGGAAGAAAGGTTTGTCAAGAAAATAATTTTAATTGACTCTCCTTCAGATAGGCTAACTCAGGTCTCTTAAGTAAATAATTTCAACTGTAGACAACGCAGTTTCGTTATCTGCAAATGTCCATGTAATTCTGCAGCCCACTTACAGCTAACCATGTAACGTTGCAAACCAAAAGCTGCCTATTGGTAAGTACTCCTTGGCAGGGATGACATTCATTTCCTCTCAGGGCTTCAGAGCCCTGCTGGTGAGAAAGACTGGGACTCGATTGCTCCCTGCCCTCTATCATTCTGTTCAAGATGCCTAGAGAACCAGAGTAAAAGGCAAATGTCCACACAAAACTGGCTGAAGAGTATTCCTCTCCTTTGTGTTTTAG
Seq C2 exon
AACCCACGGCCTCAGGAAAGCCGGACAGTATTCAGTGGCTCCGTCAGTATTCCCTCCATCACCAAGTCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCCAGCAGCGGCCTGTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-Cdc42bpa:NM_001033285:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=47.5)
A:
NA
C2:
PF0078623=PBD=PD(18.3=27.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: