DreINT0150746 @ danRer10
Intron Retention
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20548676-20552694:+
Coord C1 exon
chr23:20548676-20548840
Coord A exon
chr23:20548841-20552535
Coord C2 exon
chr23:20552536-20552694
Length
3695 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
GCTTGTTTGCTCTTGTCCAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGCAGGCTCTCATCCACGCTCTTGAGAACAATCTGAAGGAGGAGGTGGGTGCGCGACCCAACACTCCTCAGTTCTTGCTTCTTCTGACTGATGGCAAATCTCAGGATGACGCCATTGCTGCTGCCAACAGACTGAAGAATGCTGGTGTGGAGATCATTGCTATAG
Seq A exon
GTGAGAGAGCCTCTTTAAGCAAAATACACATCTGTAAAAACGAACATAGATTGAGAATGAATCATCAAAATGTTTGGGAATTCTTTTAAAAATACATTAAAGATAACAGTGCTTCAATATTTAATACATCGCTATTAACCATTTTCATATTTTATTATAATTTAATATGGAATAAATTTGTGAATTTTCAACATCATAACTATAATCTTCAGCATATTGTTATTATACATTTCCAGAAATCATTCTATGTTGACATTCAGTTTAAGAAACATTTGTGATAATTGTCAGTTAAGGAAACGGGTGCCTGGTGGTTTTTATGAAAAGTATTTTTTCAGGAACTGTGATTTTTCAAGAATTTTTATGTCTTCATTTAATGAATAGAATAGAACATGAATTATAAATGAATTGAGATTAGCAGAGAACAGTTATAGTTTTATTGCATTCCTGATCCTTGTTAAATAAACAATGTGTTTATATACAGGGCTCAACATTAACTCTTTTGCTGACCAGCCACTGTGTCTAGTAGTTTTCCAAAGTTACTAGCCACTCTGCATTTTTACTAGCCACAATTTTGTTGTTAGGAAAATACAATTAATATGCTTAGATTTCATGTTGACATGTTAAAATATTTAATTACATATAATATATAATAATTATAATGTAATAACTTAAAGGATGAAGTGGTTTCTTAGTAGTTAGCATTGTCGCCTAACAGCAAGAAAGTTGCTGGTTTGAGTCCCGGCTGGATCAGTTGATGTTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTTCCTTTGGGTGCTCCAGTTTCATCACAGTCCAAATACATTTGCTATAGGTGAATTGGGTTAGCTAAATTGGCTGTAGTGTACCGTATTTGTGTGTATGAGTGTGTAAGTGTGTTTCCCAGTACTAAGATGCGGCTGGAAGGGCATGCTCTGCGTAAAACATATGCTGGATAAGTTGACGGTTCATTCTGCTGTGGTGACCCTTGATTAATAAAGGGACTAAGGAAAATTAGGTAAAGGAAAATGAATAAAGGAATGAATAAATGAATTATTACTTAATTTGATGTGTTTTTACTTGATTTACGTCATTTAAAATCCCTCTGACCACCCAATGTATAATATGCATAGTAAACTGGCTGGTTTAAAGTAGTCAACATTTGAGTTCAACACCTTTTCTTCAAAGTTGACGTAAAGCCAAAACACCAAATTTTGTCTTAGGACAACTTTGAACTTTTTTGGTCCTCTTCAAATGTTGACTAATACCAAAGTCCCTTTAAGACAAGTCATTTCACACGGCGGCCATCTTTGAAGCACCTTTTGGGCAGTATTTTCAGGTATCCTGTCTTAATGGGAAAACATCAAATAAAAAAAAACTGTTTGTCAAGCTTAAAGAGCCCATATTATACATGAAATAAGGTCATATCTTGGTTGTAAGGGTCTCCAACAACAGTCTAATATGCATGCAAGGTCAAAAAACACTTTCATGGTCTTATAATCTGCATTTATTTTTACCTAATTATCCCAGCGACTCCTGTATGAATCGTCCAGTGATTCATTTGTTCCCAAACCCCTCCTTAGCGCGGAGCTAATCTGCGCTGATTGGACCGATGACAGTCTGTCGCGATTGGTCGACTGCCTTCAGTCAGAGAGGGAAATGGCCAATAGCTAATCAGCAATTTAAAAAGTAATCACAGTTCATACACGCTCGATAGTGTAGGCGTGGACTTTAGCTGCCACACTATGGCGAGTGGATAGTGCCACGGATAACCGAACGAAGGAGACAGTCGTGTACTCGCCATACCACACACACACAAAAACACACACACACCTCCGGATGACAACGCTCCCGCTTCAGCCCGCACCCGCCAGGTTTTAGCCTGAGAACCCGCTCCGTTTTCTGCCCGCCGCGCCCGGTCCCGCTAGAGCGGAGAACACAACCAAATATCACCCAGTATACAGTCCAGACAGCCAAGCTGTCTGTACACACACAGCACAAAGTACACAGAGCTCGTTCGTTCGTTCGCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGCGCCAGATTTCTGCGGCGCGGGAATACATTTCCGAATAAATCGCGGGAGCAGAACTCTAGCACGGAGCTCCATAAACAAACAGCACGCGTCGCGTTTTTAACGTGACTTTGCACGCGATAAGATAATATATCCAGTTAACCTGATACAGTACACGCGGTTACAAGTAACAAATCACAACTAAATACATTTGCAAGCTAGAGTAAACGAGGCAACAACTTTAACCGCACGTACTTACACTTGAGAAATGTAGGAAGAAACCCATCCTGACGTCCATCAGTTACTCTTTACTGATCCTTCCTTTAACAAACTCAGATGAAGTATTCTTTGTAGCATGTAGCTTCCAGAAGTTTCCAACTGCTTGGTTATAATGCTGAGGTTTCATCTTTGGGTAGAGACTCAATATATCCATCTGCAGTGTGACTTCAATCGACCGGCATGTTTGTGTGCGTGTGCGTGTGTTTGTGGGTGTGCGTGTGTTTGTGGGTGTGTGTGTGTGTGTGTCTGGGTTACTGCGTCAGAGGGCGGGGCCTCAGGTTTGAAATCTCCCGGGTTTGCGCGTGCACGTGAAAAACTTTGTTTCGTTCGTACGTCATGGCGAAACACCTAATGAGTCGGTATCAAGGCGACTCGTTTGAAGCACTATGATTCGACTCTTTTATAGATGAATCAACAGTTTTAAACACTGTATTCTTACAGATTTAAGCCTTAGCTGGATACTTCACTTCACTTAGAGCTGTGTTACACACTACATGGAGGGGAATTTTCAAAAACCCATAATATGGGCTCTTTAAGAGAACAACCACTAAAATGAAGCAACAACTGTCACAAGTTTAATTTCTGAACATTCGAATCAAACTAAATCTGCATTTTTTCAGGTTGCTTGAGCTAAAGCTCTTGCGCACCTGAAGGGAATGAAATCACGACACCAACCTCATTTATGGCTGTTTTACACACATCATCCTCTGGATAATGATTATCTAATCGCGCTGGTTTTCTGAAGTAATTCACAACTTATTTTTTGATGGCAAATCTGCTCCAGAAATGACAGTGACTCTTTGTTTATAAGTTTGTGGGCATTTGAGTAGTTACTGTCATGTGATTAGCGTTTGACAGGATGGACTGTACCTTACATTCATTTCATACCAATTACATAACCAAAAAGGTTTAGTTTCAAGTGTTGTTGACTCATTTAAAAGTACAAATTTCAAGCTTATTTGTATATATTTCTTATGTCTGTGAAGCAAGTATTCGCTGAGATTGCAGTGTGTTTGTTGACCACAAAAACTGTTGTAAAAGCACACGCCTGGTCCAAGATTCTCCTCTGGAGAAACATCAGTCTATAGCGATCAATGATTGGTTCTTGTTTTAGTAGGCGGGGCTTCATTCGCAATATTGACCATTACATTTTTCACCATTCAAAACTGTATGAGTGACATATCTTGTGTATTCTATAGTTTTCGCTATTACATACACTACAGGCCATACCATATAAATAGAGAATTTAAAGCCCAATATTTGGAATATAAAAGCCCAACTTTATTGTGTTTTTTTTTTATCTAAGTTTTCTGTTTGTTTGCTTGTTTGCTCTTGTCCAG
Seq C2 exon
GTGTGAAAAATGCAGATGAGGCAGAGTTGAGGCAGGTGGCGTCTGAACCTCTGGAGCTGAATGTGTATAAGGTGAATGATTTTCCTCTGCTCAGTAAACTGGTGGGAAAACTAGCACGCATCCTCTGTGGCAAGATTGAAGACCGTATTAAAGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517:ENSDART00000132920:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100),PF0385310=YjeF_N=FE(64.7=100)
A:
NA
C2:
PF0009223=VWA=PD(21.4=68.5),PF0385310=YjeF_N=PD(30.6=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]