GgaALTA0006585-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35054332-35054698:-
Coord C1 exon
chr7:35054584-35054698
Coord A exon
chr7:35054415-35054423
Coord C2 exon
chr7:35054332-35054414
Length
9 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TTATCTAGTTTCTTCATCAGGAT
3' ss Score
5.54
Exon sequences
Seq C1 exon
ATATTTTTAGATGAACTGCACGAGCACGGACAGTTACATTCGATGTCCTCTTGGATGGAGTTGTACCCAACCATAAGCTCTGACATCAGATTCACTAATATGCTTGGTCAGCCTG
Seq A exon
GATCAACAG
Seq C2 exon
CACTTGATCTCTTCAAGTTCTATGTTGAAGACTTAAAAGCACGTTACCATGATGAGAAGAAGATCATAAAAGATATCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526-26-31,26-30,26-29,26-28-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(67.9=100)
A:
NA
C2:
PF0184614=FF=PD(17.9=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACCATAAGCTCTGACA
R:
TGGTAACGTGCTTTTAAGTCTTCA
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]