GgaEX0000851 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11171041-11172940:+
Coord C1 exon
chr17:11171041-11171176
Coord A exon
chr17:11172285-11172494
Coord C2 exon
chr17:11172829-11172940
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTGAGTTTCAGGTG
3' ss Score
5.48
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
TCGGATATTTATTTTAAAGCTACTGCTGCAGTAAGTGGATCATCTCATAGCAGTTCTAAGGAAATGAGTTCAAGGAGTTCACCTCAAACACCTACAGCTTATGACATGCTGGAATGTTCTCTTTCTTCTTCAGAAG
Seq A exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
Seq C2 exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX2-2/3=1-3
Average complexity
S*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.107 C2=NA
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTGCTGCAGTAAGTGGA
R:
TGTCACTACTAGTTGATCTTACTGCT
Band lengths:
229-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]