GgaEX0000851 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10440498-10442397:+
Coord C1 exon
chr17:10440498-10440633
Coord A exon
chr17:10441742-10441951
Coord C2 exon
chr17:10442286-10442397
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTTGAGTTTCAGGTG
3' ss Score
5.48
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
TCGGATATTTATTTTAAAGCTACTGCTGCAGTAAGTGGATCATCTCATAGCAGTTCTAAGGAAATGAGTTCAAGGAGTTCACCTCAAACACCTACAGCTTATGACATGCTGGAATGTTCTCTTTCTTCTTCAGAAG
Seq A exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
Seq C2 exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=0.293 C2=0.947
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTGCTGCAGTAAGTGGA
R:
TGTCACTACTAGTTGATCTTACTGCT
Band lengths:
229-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]