DreEX6011857 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32757623-32767868:-
Coord C1 exon
chr5:32767733-32767868
Coord A exon
chr5:32760517-32760735
Coord C2 exon
chr5:32757623-32757740
Length
219 bp
Sequences
Splice sites
3' ss Seq
CATCCCTTCCTTTCCTCAAGGTG
3' ss Score
9.99
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCTGATATCTATTTCATCTCCTCAGCGCCTATAAACTCTGCCTCTAACTGTAGCTCCAGAGACACTAGTTCCCAGAGTTCCCCTCAGACACCCACCGGCTATGAGATGCCTGTCTTCCCTTCACCGCTTGGAGATG
Seq A exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
Seq C2 exon
GTTTGACTGAGGAGCCCAGCAGTAAAGCAGATGGCAACTCAGTGAAACAGAGAAGAATGAGCAAGAAAAACAAAGAGGAAGAGCAGAAGAGAACAGCAGAGATCAGCATCGCCGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'29-38,'29-37,31-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.574 C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCTATTTCATCTCCTCAGCGC
R:
TGCTCGGCGATGCTGATCTC
Band lengths:
252-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]