GgaEX0005523 @ galGal3
Exon Skipping
Gene
ENSGALG00000004142 | F1P4F0_CHICK
Description
NA
Coordinates
chr17:6279366-6281470:+
Coord C1 exon
chr17:6279366-6279535
Coord A exon
chr17:6280888-6280969
Coord C2 exon
chr17:6281362-6281470
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTACCTTTCCTCCAGGGA
3' ss Score
12.21
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAAAAGCAGTGAAGAGGCTGTGCGAGAGCGTCAGAAGGTTGTGTCCCTTGCCAGCATGAAGGAGCACAGTTTACTCCAGTTCTACGTCTCTCGAGAGTGGCTCAACAAATTCAACACCTTTGCTGAGCCTGGTCCCATCACCAATCACACCTTTCTGTGCTCTCATGGAG
Seq A exon
GGATCCCCCCTAATAAATACCATTACATTGATGACCTGGTTGTGATTCTGCCCCAGAATGTGTGGGAATATCTCTACAACAG
Seq C2 exon
GTTTGGGGGTGGCCCTGCAGTGAACCATCTGTATGTGTGCTCTATTTGCCAAGTGGAGATTGAAGCACTTGCCAAACGCAGGAGAATTGAGATTGACACCTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(43.2=100)
A:
PF063377=DUSP=FE(20.5=100)
C2:
PF063377=DUSP=PD(9.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTCTCTCGAGAGTGGCT
R:
GCGTTTGGCAAGTGCTTCAAT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event