MmuEX6100308 @ mm10
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:31017682-31018823:+
Coord C1 exon
chr2:31017682-31017851
Coord A exon
chr2:31017933-31018014
Coord C2 exon
chr2:31018715-31018823
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCCATGCTTCTCTTCACAGGTA
3' ss Score
11.16
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAAGAGCAGTGAGGAGGCCATGCGTGAGCGGCAGCAGGTAGTGTCCCTGGCTGCCATGCGGGAACCCAGCCTGCTCCGCTTCTACGTGTCCCGAGAATGGCTCAACAAATTCAACACCTTTGCCGAGCCAGGGCCCATCACCAACCACACCTTCCTGTGCTCCCATGGAG
Seq A exon
GTATCCCACCCAACAAATACCACTACATCGATGACCTGGTGGTCATCCTGCCGCAGAGCGTCTGGGAGCACCTGTACAGCAG
Seq C2 exon
GTTTGGGGGCGGCCCTGCTGTGAACCATCTGTATGTGTGCTCCATCTGCCAGGTGGAGATTGAGGCCCTGGCCAAGCGCAGGAGGGTGGAGATTGACACTTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854-'38-50,'38-48,49-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(43.2=100)
A:
PF063377=DUSP=FE(20.5=100)
C2:
PF063377=DUSP=PD(9.8=35.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCGAGAATGGCTCAAC
R:
TGTCAATCTCCACCCTCCTGC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types