GgaEX1062495 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5723367-5724752:+
Coord C1 exon
chr17:5723367-5723536
Coord A exon
chr17:5724170-5724251
Coord C2 exon
chr17:5724644-5724752
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTACCTTTCCTCCACCGT
3' ss Score
2.7
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAAAAGCAGTGAAGAGGCTGTGCGAGAGCGTCAGAAGGTTGTGTCCCTTGCCAGCATGAAGGAGCACAGTTTACTCCAGTTCTACGTCTCTCGAGAGTGGCTCAACAAATTCAACACCTTTGCTGAGCCTGGTCCCATCACCAATCACACCTTTCTGTGCTCTCATGGAG
Seq A exon
CGTTCCCGCCTAATAAATACCATTACATTGATGACCTGGTTGTGATTCTGCCCCAGAATGTGTGGGAATATCTCTACAACAG
Seq C2 exon
GTTTGGGGGTGGCCCTGCAGTGAACCATCTGTATGTGTGCTCTATTTGCCAAGTGGAGATTGAAGCACTTGCCAAACGCAGGAGAATTGAGATTGACACCTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'46-35,'46-34,47-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(43.2=100)
A:
PF063377=DUSP=FE(20.5=100)
C2:
PF063377=DUSP=PD(9.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTCTCTCGAGAGTGGCT
R:
GCGTTTGGCAAGTGCTTCAAT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]