RnoEX6016344 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9850203-9851565:+
Coord C1 exon
chr3:9850203-9850372
Coord A exon
chr3:9850449-9850530
Coord C2 exon
chr3:9851457-9851565
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTGCTTCCCTCACAGGTA
3' ss Score
12.27
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGAGCAGTGAGGAGGCCATGCGTGAGCGGCAGCAGGTGGTGTCCCTGGCTGCCATGCAGGAACCCAGCCTGCTCCGCTTCTACGTGTCCCGAGAATGGCTCAACAAGTTCAACACCTTTGCAGAGCCAGGGCCCATCACCAACCACACCTTCCTGTGCCCCCATGGAG
Seq A exon
GTATCCCACCCAATAAATACCATTACATTGATGACCTGGTGGTCATTCTGCCGCAGAGCGTCTGGGAGCACCTGTACAGCAG
Seq C2 exon
GTTTGGGGGCGGCCCTGCTGTGAACCATCTGTATGTGTGCTCCATCTGCCAGGTGGAGATTGAGGCCCTGGCCAAGCGCAGGAGGGTGGAGATTGACACTTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710-'36-36,'36-33,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(43.2=100)
A:
PF063377=DUSP=FE(20.5=100)
C2:
PF063377=DUSP=PD(9.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCGAGAATGGCTCAAC
R:
TGTCAATCTCCACCCTCCTGC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]