DreEX0083715 @ danRer10
Exon Skipping
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32715817-32718891:+
Coord C1 exon
chr5:32715817-32715986
Coord A exon
chr5:32718431-32718512
Coord C2 exon
chr5:32718783-32718891
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGATATATTAATTTCTACAGGAA
3' ss Score
7.59
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAGAGCAGTGAAGAATCTGTGAGAGAAAGACAAAGGGTTGTCGCTCTGGCTAATTTGAAGGAGCCCAGTTTGCTGCAGTTCTACATCTCCAGAGAGTGGCTCAACAAATTCAACACATTCACTGAGCCCGGACCCATCACCAATCACACTTTCCTTTGTCAGCACGGAG
Seq A exon
GAATTCCTCCTACGAAGTACCATTATGTGGATGATCTGGTTGTGATCCTTCCTCAAAATGTGTGGGAATATCTCTACAACAG
Seq C2 exon
GTTTGGAGGTGGCCCGGCTGTGAATCACTTATATGTGTGTGCAATTTGCCAAGTGGAGATCGAGACCTTAGCCAAACGACGGAAACTGGAGATAGACACCTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501_MULTIEX1-17/22=16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(44.0=100)
A:
PF063377=DUSP=FE(20.1=100)
C2:
PF063377=DUSP=PD(9.7=35.1),PF052806=FlhC=PU(47.6=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGTCGCTCTGGCTAATT
R:
ATAAGTGATTCACAGCCGGGC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]