BtaEX6046647 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100275491-100276913:+
Coord C1 exon
chr11:100275491-100275660
Coord A exon
chr11:100275740-100275821
Coord C2 exon
chr11:100276805-100276913
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTGTGTACCTTCCTCCTCAGGGA
3' ss Score
10.11
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GAAGAGCAGCGAGGAAGCTGTGCGGGAGCGACAGCAGGTGGTGTCCCTGGCCGCCATGCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGGGAATGGCTCAACAAGTTTAACACCTTCGCGGAGCCAGGGCCCATCACCAACCACACGTTCCTCTGCTCCCACGGAG
Seq A exon
GGATCCCGCCCAACAAATATCACTACATCGATGACCTGGTGGTGATCCTGCCGCAGAACGTGTGGGAGCACCTCTACAGCAG
Seq C2 exon
GTTTGGGGGCGGCCCCGCTGTGAACCATCTGTACGTGTGCTCCATCTGCCAGGTGGAGATCGAGGCTCTGGCCAAGCGCAGGCGGGTGGAGATCGACACCTTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(43.2=100)
A:
PF063377=DUSP=FE(20.5=100)
C2:
PF063377=DUSP=PD(9.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGAATGGCTCAACAAGTT
R:
GAAGGTGTCGATCTCCACCCG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]