GgaEX0006466 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5152801-5154543:+
Coord C1 exon
chr17:5152801-5152945
Coord A exon
chr17:5153044-5153198
Coord C2 exon
chr17:5154408-5154543
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTGTGACTGCCTGGGTTTAGGTT
3' ss Score
7.58
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGATGTGGATGAAACTATCAGCTGGATTAAGGAGAAAGGGCAGTTGATGGCCTCAGATGACTTTGGCAGAGACTTGGCCAGCGTGCAAGCTTTACTACGTAAGCATGAAGGCCTGGAAAGAGATCTTGCAGCTTTGGAGGATAAG
Seq A exon
GTTAAGGCCCTCTGTGCAGAAGCTGACCGTTTGCAGCAGTCTCACCCTATAAATGCTTCTCAAATTCAAGTGAAACGGGAGGAACTGATTGCCAACTGGGAGCAGATCCGAACTCTGGCAGCAGAGAGGCATGCTCGCCTTAATGACTCCTACAG
Seq C2 exon
GTTGCAGCGCTTTCTTGCAGATTTCCGGGACCTCACTAGCTGGGTAACTGAGATGAAGGCTCTGATAAATGCTGATGAGCTTGCCAATGATGTGGCTGGAGCAGAAGCCCTTCTAGATAGACATCAGGAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.065
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.7=100)
A:
PF0043516=Spectrin=PD(45.7=92.3),PF0043516=Spectrin=PU(1.0=1.9)
C2:
PF0043516=Spectrin=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGAAACTATCAGCTGGA
R:
TCTGCTCCAGCCACATCATTG
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]