BtaEX6046483 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99138660-99139877:+
Coord C1 exon
chr11:99138660-99138804
Coord A exon
chr11:99138887-99139041
Coord C2 exon
chr11:99139742-99139877
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGACGAGCGTGTGTCTCCAGGTC
3' ss Score
6.7
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GGATGTGGACGAGACCATCAGCTGGATTAAGGAGAAGGAACAGTTAATGGCCTCTGATGACTTTGGCCGGGACCTGGCCAGCGTCCAGGCTTTACTACGGAAACACGAGGGTTTGGAGAGAGATCTTGCTGCCTTGGAGGACAAG
Seq A exon
GTCAAAGCCCTGTGTGCCGAGGCTGACCGCCTGCATCAGTCCCACCCTCTGAGTGCCACCCAGATCCAGGTGAAGCGAGAGGAGCTGATCACCAACTGGGAGCAGATCCGCACCCTGGCCGCGGAGAGACACGCACGTCTCAACGATTCCTACAG
Seq C2 exon
GCTTCAGCGCTTCCTTGCCGACTTCCGAGACCTCACCAGCTGGGTCACTGAGATGAAAGCCCTCATCAACGCAGATGAACTTGCCAACGATGTGGCCGGAGCCGAAGCCCTGCTGGATAGGCATCAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.065
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.7=100)
A:
PF0043516=Spectrin=PD(45.7=92.3),PF0043516=Spectrin=PU(1.0=1.9)
C2:
PF0043516=Spectrin=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGGACGAGACCATCAG
R:
GGCCACATCGTTGGCAAGTTC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]