MmuEX6100167 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29986395-29988469:+
Coord C1 exon
chr2:29986395-29986539
Coord A exon
chr2:29986778-29986932
Coord C2 exon
chr2:29988334-29988469
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGATAGAATCTGTTTTTAGGTG
3' ss Score
6.3
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GGATGTAGATGAGACCATTGGTTGGATTAAGGAGAAAGAGCAGTTAATGGCCTCTGATGACTTCGGCAGAGACTTAGCAAGTGTTCAAGCTCTGCTTCGAAAGCATGAGGGTCTGGAGAGAGATCTTGCTGCTCTAGAGGACAAG
Seq A exon
GTGAAAGCCCTGTGTGCTGAGGCTGACCGCCTGCAACAGTCACACCCTCTGAGTGCCAGCCAGATCCAGGTGAAGCGAGAGGAGCTGATTACCAACTGGGAACAGATCCGAACTCTGGCAGCAGAGAGACATGCACGGCTTGATGACTCGTACAG
Seq C2 exon
GCTTCAGCGCTTTCTTGCTGACTTCCGTGACCTCACAAGCTGGGTAACTGAAATGAAAGCCCTCATCAATGCAGATGAACTGGCCAATGATGTGGCTGGTGCTGAAGCCCTGCTGGACAGGCATCAAGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'22-20,'22-16,27-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.065
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.7=100)
A:
PF0043516=Spectrin=PD(45.7=92.3),PF0043516=Spectrin=PU(1.0=1.9)
C2:
PF0043516=Spectrin=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGTTAATGGCCTCTGA
R:
TTGTGCTCTTGATGCCTGTCC
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types