RnoEX6016245 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8555463-8557625:+
Coord C1 exon
chr3:8555463-8555607
Coord A exon
chr3:8555844-8555998
Coord C2 exon
chr3:8557490-8557625
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGATAGAATCTGTTTCTAGGTG
3' ss Score
6.25
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GGATGTAGATGAGACCATTGGTTGGATTAAGGAGAAAGAGCAGTTAATGGCCTCTGATGACTTTGGCAGAGACTTAGCAAGTGTTCAAGCTCTGCTTCGGAAGCATGAGGGTCTGGAGAGAGATCTTGCTGCTCTAGAGGACAAG
Seq A exon
GTGAAAGCCCTGTGTGCCGAGGCTGACCGCCTGCAACAGTCACACCCTCTGAGTGCCAACCAGATCCAGGTGAAGCGAGAGGAACTAATTACCAACTGGGAGCAGATCCGAACTCTGGCCGCAGAGAGACATGCACGGCTTGATGACTCATACAG
Seq C2 exon
GCTTCAGCGCTTTCTTGCTGACTTCCGTGACCTCACGAGCTGGGTGACTGAAATGAAAGCCCTCATCAATGCAGATGAACTGGCCAATGACGTGGCTGGTGCTGAGGCCCTGCTGGACAGGCATCAAGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'21-24,'21-21,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.067
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.7=100)
A:
PF0043516=Spectrin=PD(45.7=92.3),PF0043516=Spectrin=PU(1.0=1.9)
C2:
PF0043516=Spectrin=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGTTAATGGCCTCTGA
R:
TTGTGCTCTTGATGCCTGTCC
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]