DreEX6083501 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13071358-13072835:+
Coord C1 exon
chr21:13071358-13071502
Coord A exon
chr21:13072432-13072586
Coord C2 exon
chr21:13072700-13072835
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTCCTGTCTGCAGGTA
3' ss Score
12.02
5' ss Seq
CATGTGGGT
5' ss Score
2.93
Exon sequences
Seq C1 exon
GGATGTGGATGAGACAATCAGCTGGATTAAGGAGAAGGAGCAGTTGATGGCATCTGATGATTTTGGTCGTGACCTCGCCAGCGTTCAAGCTTTGCTCCGGAAACACGAAGGGCTGGAAAGAGATTTGGCAGCTTTGAATGACAAG
Seq A exon
GTAAACACTCTTGGTGGCGAGGCGGACCGTCTGCAGCAAACACACCCCCAGAATGCCACTCAAATCCACCTGAAGAGAGATGAACTCATTACCAACTGGGAGCAGATCCAAACCCTGGCGACTGAGCGACATGCTCGACTTAATGACTCCTACAT
Seq C2 exon
GCTGCAGCGCTTCACTGCAGATTTCCGCGACTTGACGAGCTGGGTGACCGAGATGAAGGCTTTGATCAATGCAGATGAACTGGCCAACGATGTGGCTGGAGCGGAGGCCCTGCTTGATCGCCACCAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.404 C2=0.239
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(45.7=100)
A:
PF0043516=Spectrin=PD(45.7=92.3),PF0043516=Spectrin=PU(1.0=1.9)
C2:
PF0043516=Spectrin=FE(42.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGAGCAGTTGATGGC
R:
CTGGTGGCGATCAAGCAGG
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]