GgaEX0008722 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:139078-141081:-
Coord C1 exon
chrE22C19W28_E50C23:140967-141081
Coord A exon
chrE22C19W28_E50C23:139815-140016
Coord C2 exon
chrE22C19W28_E50C23:139078-139187
Length
202 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTTCCTTTCTTTAGGCA
3' ss Score
11.46
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GATTGCTGTTTTCTCAGTATCTGTCTTCTATGATGAGAGGATTGTGGTGGTGGCAGAGCAGAGGCCAGATGCATCTGAGGAGGACAGCTTTCAATGGATGAGTCGTGTACTGCAG
Seq A exon
GCAATTGACAGCATTCACCAAGTGGGCGTATATTGCCTTGCTCTTGTGCCAGCTAATACATTGCCAAAAACTCCGCTGGGAGGGATCCATATCTCTCAAACTAAACAGCACTTTCTGGAGGGCTCTCTGCATCCATGCAACATCCTCATGTGCCCACACACGTGTGTGACGAACTTGCCAAAACCCAGGCAGAAACAACCAG
Seq C2 exon
GTGTGGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTTGCTGGGAAGCGTATTGCTCAAGCCTCTGGAAGAGATCTTGGTCAAATAGAAGACAATGATTTAGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'25-29,'25-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTTTTCTCAGTATCTGTCT
R:
AATCATTGTCTTCTATTTGACCAAGA
Band lengths:
212-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]