DreEX6081095 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27449714-27451648:-
Coord C1 exon
chr23:27451534-27451648
Coord A exon
chr23:27451137-27451338
Coord C2 exon
chr23:27449714-27449826
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTGACTGTGTTCCTATAGGCT
3' ss Score
10.2
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GATTGCCGTGTTCTCTGTTACTGTGTTCTATGATGAGCGGGTAGTGATTGTTGCAGAGCAGAGGCCTGACGCCAATGAAGAGGACAGTTTTCAGTGGATGAGCAGAGTCTTGCAG
Seq A exon
GCTATAGACAGTATCCACCAGGTGGGCTTGTATTGTTTGGCGCTGGTGCCTGCAAATACATTACCCAAAACTCCACTGGGTGGTATTCATGTGTCTGAGACCAAACATCATTTCCTGGAGGGATCTCTGCATCCCTGCAACATTCTGATGTGCCCTCATACTTGTGTCACAAACCTTCCAAAACCCAGACAAAAGCAGCCAG
Seq C2 exon
TGGGAGTCGGTCCAGCTTCCATCATGGTAGGCAACCTGGTAGCAGGAAAGAGGATTGCACAGGCTAGTGGGAGAGATCTTGGGCTAATTGATGACCAGGAGCAATCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'30-26,'30-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCCGTGTTCTCTGTTACTG
R:
CTTTCTGGATTGCTCCTGGTCA
Band lengths:
228-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]