BtaEX6020710 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29374845-29385427:-
Coord C1 exon
chr5:29385313-29385427
Coord A exon
chr5:29380075-29380276
Coord C2 exon
chr5:29374845-29374954
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCATATTTTTCTAGGCA
3' ss Score
9.69
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATCGTGGTGGTTGCAGAACAAAGACCCGACGCTTCCGAGGAAGATAGTTTCCAGTGGATGAGCCGTGTGCTACAG
Seq A exon
GCAATTGATAGCATTCATCAAGTGGGGGTTTATTGTCTTGCTCTGGTGCCTGCCAATACACTGCCCAAAACTCCGCTGGGAGGGATCCACATATCTCAGACGAAACAGCTCTTTCTGGAGGGATCGCTACATCCTTGCAATATCCTCATGTGCCCACATACGTGCGTGACCAATTTGCCAAAACCCCGGCAAAAGCAACCAG
Seq C2 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCAGGAAAACGCATAGCACAAGCTGCAGGAAGGGATCTCGGGCAAATTGAAGAGAATGATTTAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTTTTCTGTGTCTGT
R:
CTTCCTCACTAAATCATTCTCTTCAA
Band lengths:
222-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]