MmuEX1008499 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100183007-100190141:+
Coord C1 exon
chr15:100183007-100183121
Coord A exon
chr15:100186141-100186342
Coord C2 exon
chr15:100190032-100190141
Length
202 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTGTTTTCCAGGCA
3' ss Score
11.5
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATTGCTGTGTTTTCTGTGTCTGTGTTTTATGACGAGCGCATTGTGGTGGTGGCAGAACAAAGGCCCGATGCGTCTGAGGAAGACAGTTTCCAGTGGATGAGCCGGGTGCTGCAG
Seq A exon
GCAATCGACAGCATCCATCAAGTCGGCGTGTACTGTCTTGCCCTGGTGCCAGCTAACACGTTACCAAAAACCCCACTAGGAGGAATCCATATATCCCAGACAAAACAGCTCTTTCTGGAGGGTTCTCTACACCCGTGTAATATCCTCATGTGCCCACATACGTGTGTGACGAACTTGCCAAAGCCCCGACAAAAGCAACCAG
Seq C2 exon
GTGTAGGCCCTGCTTCTGTGATGGTTGGGAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTGGGCCAAATAGAAGAGAATGACCTGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'49-38,'49-37,50-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTTTTCTGTGTCTGTGT
R:
TCCTCACCAGGTCATTCTCTTCT
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types