GgaEX1019777 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:164061-166064:-
Coord C1 exon
chrLGE22C19W28_E50C23:165950-166064
Coord A exon
chrLGE22C19W28_E50C23:164798-164999
Coord C2 exon
chrLGE22C19W28_E50C23:164061-164170
Length
202 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTTCCTTTCTTTAGGCA
3' ss Score
11.46
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GATTGCTGTTTTCTCAGTATCTGTCTTCTATGATGAGAGGATTGTGGTGGTGGCAGAGCAGAGGCCAGATGCATCTGAGGAGGACAGCTTTCAATGGATGAGTCGTGTACTGCAG
Seq A exon
GCAATTGACAGCATTCACCAAGTGGGCGTATATTGCCTTGCTCTTGTGCCAGCTAATACATTGCCAAAAACTCCGCTGGGAGGGATCCATATCTCTCAAACTAAACAGCACTTTCTGGAGGGCTCTCTGCATCCATGCAACATCCTCATGTGCCCACACACGTGTGTGACGAACTTGCCAAAACCCAGGCAGAAACAACCAG
Seq C2 exon
GTGTGGGCCCTGCCTCTGTGATGGTGGGGAACCTGGTTGCTGGGAAGCGTATTGCTCAAGCCTCTGGAAGAGATCTTGGTCAAATAGAAGACAATGATTTAGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'41-37,'41-36,42-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTTTTCTCAGTATCTGTCT
R:
AATCATTGTCTTCTATTTGACCAAGA
Band lengths:
212-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]