RnoEX6034071 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141848732-141855984:+
Coord C1 exon
chr7:141848732-141848846
Coord A exon
chr7:141851741-141851942
Coord C2 exon
chr7:141855875-141855984
Length
202 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCTCTGTTTTCCAGGCG
3' ss Score
11.14
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATTGCTGTGTTTTCTGTGTCTGTGTTTTATGACGAGCGCATTGTGGTGGTGGCAGAACAAAGGCCCGATGCGTCTGAGGAAGACAGCTTCCAGTGGATGAGCCGAGTGCTGCAG
Seq A exon
GCGATTGACACCATCCATCAAGTCGGTGTGTACTGTCTTGCCCTGGTGCCAGCCAATACATTACCAAAAACCCCGCTAGGAGGGATCCATATATCCCAGACCAAACAGCTCTTTCTGGAGGGTTCTCTACACCCGTGCAACATCCTCATGTGCCCACATACGTGTGTGACGAACTTGCCAAAGCCCCGACAGAAGCAACCAG
Seq C2 exon
GTGTAGGCCCTGCCTCTGTGATGGTTGGCAATCTGGTTGCTGGTAAACGCATAGCACAGGCTGCCGGAAGGGACCTCGGTCAAATAGAAGAGAATGATCTGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'37-37,'37-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTTTTCTGTGTCTGTGT
R:
TCCTCACCAGATCATTCTCTTCT
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]