HsaEX6066507 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50708448-50718818:+
Coord C1 exon
chr12:50708448-50708562
Coord A exon
chr12:50714395-50714596
Coord C2 exon
chr12:50718709-50718818
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTATTTTTCTAGGCG
3' ss Score
9.89
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATTGTGGTGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGTTTCCAGTGGATGAGCCGCGTGCTGCAG
Seq A exon
GCGATCGATAGCATTCATCAAGTGGGGGTTTATTGTCTTGCTCTGGTGCCAGCCAATACATTGCCAAAAACTCCACTAGGAGGAATCCATATATCTCAGACGAAACAACTCTTTCTGGAGGGATCACTGCATCCTTGCAACATCCTCATGTGCCCCCATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAACCAG
Seq C2 exon
GTGTAGGCCCTGCTTCCGTGATGGTTGGGAATCTGGTTGCTGGAAAACGTATAGCACAAGCTGCTGGAAGGGATCTGGGACAAATAGAAGAGAATGATTTGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTTTTCTGTGTCTGT
R:
TCCTCACCAAATCATTCTCTTCT
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains