HsaEX6066507 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51102231-51112601:+
Coord C1 exon
chr12:51102231-51102345
Coord A exon
chr12:51108178-51108379
Coord C2 exon
chr12:51112492-51112601
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTATTTTTCTAGGCG
3' ss Score
9.89
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATTGTGGTGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGTTTCCAGTGGATGAGCCGCGTGCTGCAG
Seq A exon
GCGATCGATAGCATTCATCAAGTGGGGGTTTATTGTCTTGCTCTGGTGCCAGCCAATACATTGCCAAAAACTCCACTAGGAGGAATCCATATATCTCAGACGAAACAACTCTTTCTGGAGGGATCACTGCATCCTTGCAACATCCTCATGTGCCCCCATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAACCAG
Seq C2 exon
GTGTAGGCCCTGCTTCCGTGATGGTTGGGAATCTGGTTGCTGGAAAACGTATAGCACAAGCTGCTGGAAGGGATCTGGGACAAATAGAAGAGAATGATTTGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGTTTTCTGTGTCTGT
R:
TCCTCACCAAATCATTCTCTTCT
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)