GgaEX0008729 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:147330-148769:-
Coord C1 exon
chrE22C19W28_E50C23:148678-148769
Coord A exon
chrE22C19W28_E50C23:148084-148194
Coord C2 exon
chrE22C19W28_E50C23:147330-147453
Length
111 bp
Sequences
Splice sites
3' ss Seq
AACATCTTTGTGAATTGTAGGTA
3' ss Score
7.81
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCAAATTGTGGAGCAGAAGTCTCAAGCTGGCCTACACACTGCTTAACAAACTGGGGACCAAAAATGAACCTGTGTTAAAACCTGGAGATAGG
Seq A exon
GTAGCCCTTGTGTACCCGAACAATGACCCAGTCATGTTTATGGTGGCATTTTACGGCTGTCTCCTAGCAGAAGTGATACCAGTGCCTATAGAGGTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGTGGTCAGCAGATTGGTTTTCTTCTGGGAAGCTGTGGTATTGCTTTGGCCCTCACCACTGAAGTCTGTCTGAAAGGGCTTCCAAAAACCCAAAATGGAGAAATTGTGCAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'9-15,'9-14,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATTGTGGAGCAGAAGTCT
R:
ACTGCACAATTTCTCCATTTTGGG
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]