MmuEX6056494 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100157877-100162101:+
Coord C1 exon
chr15:100157877-100157968
Coord A exon
chr15:100160442-100160552
Coord C2 exon
chr15:100161978-100162101
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGTCTCTGTGAATTTTAGGTT
3' ss Score
10.03
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAAGTTGTGGAGCAGAAGTTTAAAGTTGGCTTACACACTGCTTAATAAACTGGGAACAAAAAATGAACCTGTGTTAAAACCTGGAGACAGG
Seq A exon
GTTGCCCTGGTTTACCCCAACAATGACCCTGTCATGTTTATGGTGGCTTTTTATGGATGTCTCCTGGCAGAAGTGATTCCAGTACCCATAGAAGTACCCCTGACCAGAAAG
Seq C2 exon
GATGCCGGAGGTCAGCAGATTGGCTTCTTGCTAGGGAGCTGTGGGATTGCCTTAGCTCTCACCAGTGAAATTTGTCTGAAAGGCCTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'31-20,'31-17,32-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(7.6=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGTGGAGCAGAAGTTT
R:
ACTGTACAATTTCTCCATTCTGGGT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types