GgaEX1019768 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:172313-173752:-
Coord C1 exon
chrLGE22C19W28_E50C23:173661-173752
Coord A exon
chrLGE22C19W28_E50C23:173067-173177
Coord C2 exon
chrLGE22C19W28_E50C23:172313-172436
Length
111 bp
Sequences
Splice sites
3' ss Seq
AACATCTTTGTGAATTGTAGGTA
3' ss Score
7.81
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCAAATTGTGGAGCAGAAGTCTCAAGCTGGCCTACACACTGCTTAACAAACTGGGGACCAAAAATGAACCTGTGTTAAAACCTGGAGATAGG
Seq A exon
GTAGCCCTTGTGTACCCGAACAATGACCCAGTCATGTTTATGGTGGCATTTTACGGCTGTCTCCTAGCAGAAGTGATACCAGTGCCTATAGAGGTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGTGGTCAGCAGATTGGTTTTCTTCTGGGAAGCTGTGGTATTGCTTTGGCCCTCACCACTGAAGTCTGTCTGAAAGGGCTTCCAAAAACCCAAAATGGAGAAATTGTGCAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'23-20,'23-19,26-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATTGTGGAGCAGAAGTCT
R:
ACTGCACAATTTCTCCATTTTGGG
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]