RnoEX0027945 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141825232-141827423:+
Coord C1 exon
chr7:141825232-141825323
Coord A exon
chr7:141825734-141825844
Coord C2 exon
chr7:141827300-141827423
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGTCTCTGTGAATTTTAGGTT
3' ss Score
10.03
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGAAGTTGTGGAGCAGAAGTTTAAAGTTGGCTTATACACTGCTTAATAAACTGGGAACAAAAAACGAACCTGTGTTAAAACCTGGAGACAGG
Seq A exon
GTTGCCCTGGTTTACCCCAACAATGATCCTGTCATGTTTATGGTGGCTTTTTATGGATGTCTTCTGGCAGAAGTGATTCCAGTACCCATAGAAGTACCCCTGACCAGAAAG
Seq C2 exon
GATGCCGGAGGTCAGCAGATTGGCTTCTTGCTAGGGAGCTGTGGGATTGCCTTAGCTCTCACCAGTGAAATTTGTCTGAAGGGCCTGCCAAAAACCCAGAATGGAGAAATCGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(7.6=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTGTGGAGCAGAAGTT
R:
ACTGTACGATTTCTCCATTCTGGG
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]