BtaEX6020698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29404105-29407886:-
Coord C1 exon
chr5:29407795-29407886
Coord A exon
chr5:29405789-29405899
Coord C2 exon
chr5:29404105-29404228
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGTCATTATGCCTTTTAGGTA
3' ss Score
8.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAAAGTTGTGGAGCAGAAGTTTAAAGTTGGCCTATACACTGCTTAATAAACTGGGGACCAAAAATGAACCTGTATTAAAACCTGGAGATAGG
Seq A exon
GTAGCCCTGGTTTACCCCAACAATGATCCGGTCATGTTTATGGTGGCCTTTTACGGTTGTCTCCTGGCAGAAGTGATTCCAGTGCCCATAGAGGTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGGGGGCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAGGTTTGTCTAAAGGGATTGCCAAAAACTCAGAATGGAGAAATCGTACAATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(7.6=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGTGGAGCAGAAGTTT
R:
ATTGTACGATTTCTCCATTCTGAGT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]