HsaEX0019741 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51074455-51079739:+
Coord C1 exon
chr12:51074455-51074546
Coord A exon
chr12:51076921-51077031
Coord C2 exon
chr12:51079616-51079739
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATATCATTATGAATTTTAGGTA
3' ss Score
6.19
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAAAGTTGTGGAGCAGAAGTTTAAAGTTGGCCTACACACTTCTTAATAAACTGGGGACCAAAAATGAACCTGTGTTAAAACCTGGAGACAGG
Seq A exon
GTAGCCCTGGTTTACCCCAACAATGATCCAGTCATGTTTATGGTGGCTTTCTATGGATGCCTCCTGGCAGAAGTGATTCCAGTGCCTATAGAGGTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGAGGTCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAAGTTTGTCTAAAAGGACTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(19.9=100)
A:
PF0050123=AMP-binding=FE(23.8=100)
C2:
PF0050123=AMP-binding=FE(27.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGTGGAGCAGAAGTTT
R:
ACTGTACAATTTCTCCATTCTGGGT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)