HsaEX0019741 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50680672-50685956:+
Coord C1 exon
chr12:50680672-50680763
Coord A exon
chr12:50683138-50683248
Coord C2 exon
chr12:50685833-50685956
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATATCATTATGAATTTTAGGTA
3' ss Score
6.19
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAAAGTTGTGGAGCAGAAGTTTAAAGTTGGCCTACACACTTCTTAATAAACTGGGGACCAAAAATGAACCTGTGTTAAAACCTGGAGACAGG
Seq A exon
GTAGCCCTGGTTTACCCCAACAATGATCCAGTCATGTTTATGGTGGCTTTCTATGGATGCCTCCTGGCAGAAGTGATTCCAGTGCCTATAGAGGTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGAGGTCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAAGTTTGTCTAAAAGGACTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(30.9=100)
A:
PF0050123=AMP-binding=FE(37.1=100)
C2:
PF0050123=AMP-binding=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGTGGAGCAGAAGTTT
R:
ACTGTACAATTTCTCCATTCTGGGT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development