DreEX6081085 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27456928-27457420:-
Coord C1 exon
chr23:27457329-27457420
Coord A exon
chr23:27457139-27457249
Coord C2 exon
chr23:27456928-27457051
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTTTACATTTCTCTTTAGGTG
3' ss Score
11.01
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTAAACTCTGGAGTCGCAGTCTGAAGTTGGCGTACACACTGTTAAACAAACTTGGTACCAAAAATGAACCAGTCCTGAAACCTGGAGATCGA
Seq A exon
GTGGCGTTAGTTTATCCCAACAGTGACCCTGGGATGTTCTGGGTGGCCTTTTATGGGTGCCTTCTTGCTGAGGTCATTCCTGTCCCGATAGAGGTGCCATTATCTCGAAAG
Seq C2 exon
GATGCAGGGAGTCAGCAGATAGGCTTCCTGTTGGGTAGCTGTGGTGTTGGTCTGGCGCTCACAAGTGAAGTCTGTCTAAAGGGACTTCCAAAGACCCCGAATGGAGAAATAATGCAATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(7.5=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAACTCTGGAGTCGCAGTCTG
R:
ATTGCATTATTTCTCCATTCGGGGT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]