GgaEX0009070 @ galGal3
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
NA
Coordinates
chrE22C19W28_E50C23:455310-455874:+
Coord C1 exon
chrE22C19W28_E50C23:455310-455360
Coord A exon
chrE22C19W28_E50C23:455635-455722
Coord C2 exon
chrE22C19W28_E50C23:455810-455874
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTGCCTGTCCCCAGGAC
3' ss Score
12.19
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGGCTGCCCCACAAGATCCGTAAGCTGCACGCGGCGCTGGAGCGGATGCTG
Seq A exon
GACCCATCATGGAACCACCGGGTTTATCGTCTGGCCGTCGCCAAGCTGAGCCCCCCCATCATCCCCTTCGTCCCCCTCCTCCTTAAAG
Seq C2 exon
ACATGACCTTCATCCACGAAGGCAACCGCACGCTGGCTGAGAACCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'21-23,'21-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCACAAGATCCGTAAG
R:
TCTTCTCAAAGTTGATGAGGTTCTCA
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event