BtaEX6021140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32715146-32716563:+
Coord C1 exon
chr5:32715146-32715196
Coord A exon
chr5:32716086-32716173
Coord C2 exon
chr5:32716499-32716563
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTTCTTCCCTCTCAGGAC
3' ss Score
10.82
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGGCTGCCCCACAAAGTCCGGAAGCTCTACTCGGCCCTCGAGAGGCTGCTG
Seq A exon
GACCCCTCATGGAACCACCGAGTGTACCGTCTGGCCCTCACCAAGCTCTCCCCTCCCCTCATCCCCTTCATGCCCCTTCTTCTCAAAG
Seq C2 exon
ACATGACCTTCATCCATGAGGGAAATCACACATTGGTGGAGAATCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'28-30,'28-28,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGCCCCACAAAGTC
R:
TCTCAAAGTTGATGAGATTCTCCACC
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]