GgaEX1048240 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:439061-439625:+
Coord C1 exon
chrLGE22C19W28_E50C23:439061-439111
Coord A exon
chrLGE22C19W28_E50C23:439386-439473
Coord C2 exon
chrLGE22C19W28_E50C23:439561-439625
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTGCCTGTCCCCAGGAC
3' ss Score
12.19
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGGCTGCCCCACAAGATCCGTAAGCTGCACGCGGCGCTGGAGCGGATGCTG
Seq A exon
GACCCATCATGGAACCACCGGGTTTATCGTCTGGCCGTCGCCAAGCTGAGCCCCCCCATCATCCCCTTCGTCCCCCTCCTCCTTAAAG
Seq C2 exon
ACATGACCTTCATCCACGAAGGCAACCGCACGCTGGCTGAGAACCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'35-41,'35-38,36-41
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCACAAGATCCGTAAG
R:
TCTTCTCAAAGTTGATGAGGTTCTCA
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]