DreEX6081724 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33510422-33510804:+
Coord C1 exon
chr23:33510422-33510472
Coord A exon
chr23:33510555-33510642
Coord C2 exon
chr23:33510740-33510804
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTAATAATCTGTGTTTTAGGAT
3' ss Score
9.37
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGACTTCCCAATAAAACCAAAAGGATCTACTGTGCATACGAAAGACTGATG
Seq A exon
GATCCGTCCCGTAACCACAGGGCCTACAGACTGACTATTGCCAAACTCAGCCCTCCATACATTCCCTTCATGCCACTGCTTCTAAAAG
Seq C2 exon
ATATGACATTTATTCATGAGGGAAACAAGAACTACACTGATAAACTGGTCAACTTTGAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCCCAATAAAACCAAAAGGA
R:
TCTCAAAGTTGACCAGTTTATCAGTG
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]