MmuEX6056118 @ mm10
Exon Skipping
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97748213-97749546:-
Coord C1 exon
chr15:97749496-97749546
Coord A exon
chr15:97748583-97748670
Coord C2 exon
chr15:97748213-97748277
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCAGCCTTCTTTCCTCACAGGAC
3' ss Score
9.47
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGCCTGCCCCATAAAGTACGGAAGCTGTACTCAGCCCTGGAAAGGTTGCTG
Seq A exon
GACCCTTCCTGGAACCACCGAGTGTACCGATTGGCTCTCACCAAGCTCTCCCCTCCTGTCATCCCCTTCATGCCCCTGCTGCTCAAAG
Seq C2 exon
ACGTGACCTTCATCCATGAGGGGAACCACACACTGGTAGAGAACCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469-'51-56,'51-55,54-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.7=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGCCCCATAAAGTACG
R:
TCTCAAAGTTGATGAGGTTCTCTACC
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types