HsaEX6066156 @ hg19
Exon Skipping
Gene
ENSG00000079337 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:16629]
Coordinates
chr12:48132473-48133974:-
Coord C1 exon
chr12:48133924-48133974
Coord A exon
chr12:48132926-48133013
Coord C2 exon
chr12:48132473-48132537
Length
88 bp
Sequences
Splice sites
3' ss Seq
AGTGTGGCTTCTTCCCCTAGGAT
3' ss Score
9.88
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CGGCTGCCTCACAAAGTCCGGAAGCTGTACTCCGCCCTCGAGAGGCTGCTG
Seq A exon
GATCCCTCATGGAACCACCGGGTATACCGACTGGCCCTCGCCAAGCTCTCCCCTCCTGTCATCCCCTTCATGCCCCTTCTTCTCAAAG
Seq C2 exon
ACATGACCTTCATTCATGAGGGAAACCACACACTAGTGGAGAATCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079337-'30-36,'30-35,34-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.7=100),PF136131=HTH_Tnp_4=PD(27.3=50.0)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGCCTCACAAAGTCC
R:
TCTCAAAGTTGATGAGATTCTCCACT
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)