RnoEX6033817 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139235257-139236589:-
Coord C1 exon
chr7:139236539-139236589
Coord A exon
chr7:139235663-139235750
Coord C2 exon
chr7:139235257-139235321
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCAGCCTTCTCTCCTTGCAGGAC
3' ss Score
10.82
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGTCTGCCCCATAAAGTACGGAAGCTGTACTCGGCCCTGGAAAGGTTGCTG
Seq A exon
GACCCTTCCTGGAACCACCGAGTGTACCGATTGGCTCTCACCAAGCTCTCTCCTCCTGTCATCCCTTTCATGCCCCTGCTACTCAAAG
Seq C2 exon
ACATGACCTTCATCCATGAAGGGAACCACACACTGGTAGAAAACCTCATCAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'39-46,'39-45,41-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGCCCCATAAAGTACGG
R:
TCTCAAAGTTGATGAGGTTTTCTACC
Band lengths:
111-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]