GgaEX0022537 @ galGal3
Exon Skipping
Gene
ENSGALG00000015375 | PLCXD2
Description
NA
Coordinates
chr1:91708904-91710563:+
Coord C1 exon
chr1:91708904-91708942
Coord A exon
chr1:91709198-91709285
Coord C2 exon
chr1:91710322-91710563
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATTTCTTCTTGATCAACAGGAT
3' ss Score
8.69
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGCCAGAATTTCTTTGGTTAAGAAGATAATGAAGAAATG
Seq A exon
GATTCGCTCGGCATTTGGATCCAAACTTTGTTGCGTTGAATGTGTAGAATATGTGACGTTACAGTACATGTGGGAAAAGAAGCATCAG
Seq C2 exon
GTTCTTATTTTCTACCACTACCCCTTGTATCGAGAATTTCCCTTTCTATGGCCAGGGAATAAAATGCCAGCACCATGGGCTAATACGACCAATGTGCACAAGCTCTTACAGTTCCTAGAGACCACTCTTGAGGAACGAAGTCGTTACGGAACTTTTCATGTTTCTCAAGCAATTCTCACTCCTCGGGTGAAAACTATTGCACGACATCTGGTCCGTGGCCTAAAGAACACGCTTGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015375-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGAATTTCTTTGGTTAAGA
R:
CGACTTCGTTCCTCAAGAGTGG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]