HsaEX6057614 @ hg38
Exon Skipping
Gene
ENSG00000240891 | PLCXD2
Description
phosphatidylinositol specific phospholipase C X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
Coordinates
chr3:111674676-111714128:+
Coord C1 exon
chr3:111674676-111675408
Coord A exon
chr3:111707926-111708386
Coord C2 exon
chr3:111713887-111714128
Length
461 bp
Sequences
Splice sites
3' ss Seq
ACCTGTATTCCTTTGTACAGGCT
3' ss Score
7.46
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGCTCCGGGTGTGGCTGCTCCTCGGACTTTCAGTTTATGTAAGATTTATCTCTAGGGGCCTACCTTCCCCCATCTCCAGAGGGGAACATAAGAAGTTTAACGGAGCTGGGACTGAGCAGATTAAGGGAGTGGAGCGGAGGCTGGGCCGGAGAGAGTGGGGACTGTGAGTGCTAGTGGGTAAGGATCCATCTGTTTGCCCCGTCCCCCAGCCAGAAAGGCATTTTGGAAAGACTGGCGTGGCAAGCGTCGCCCTGAAACGTCCACAGAGCCCAAGAAGTGATGATCACTGAGTGAGTGGCACTGGGCTGAGACTGGCCAGTTTGTTAACAACAGGGATGCTAGCAGTTAGGAAGGCCAGGAGGAAACTCAGGATGGGGACCATCTGCTCCCCCAACCCCAGCGGGACAAAGACATCATCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACCTCCCCCTTTCCAATCTGGCAATCCCAG
Seq A exon
GCTCACATGATTCATTCAGCTACTGGGTGGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTATCAAACGCCTCGCCAGGATCTCCTTGGTGAAGAAGCTAATGAAGAAGTGGTCTGTGACTCAGAACCTGACATTTCGAGAACAGCTGGAAGCTGGGATCCGCTACTTTGACCTGCGTGTGTCTTCCAAACCAGGGGATGCCGACCAGGAGATCTACTTCATCCATGGGCTTTTTGGCATCAAGGTCTGGGATGGGCTGATGGAAATTGACTCGTTTCTTACACAGCACCCCCAGGAGATTATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGACCCATCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGAAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGTTTGACGCTGCGAACTCTGTGGGAGAAGAACTGCCAG
Seq C2 exon
GTTCTTATTTTCTACCACTGTCCCTTCTACAAGCAGTACCCCTTCCTGTGGCCAGGAAAGAAGATTCCAGCGCCCTGGGCAAACACCACAAGTGTGCGCAAACTAATCCTCTTCTTGGAGACCACTCTGAGTGAGCGGGCCTCACGGGGCTCCTTCCATGTCTCCCAAGCGATCCTCACCCCCAGAGTGAAGACCATTGCCCGGGGCTTGGTTGGGGGCCTCAAGAACACGCTGGTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240891-'0-5,'0-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=FE(90.5=100)
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAGAGCCCAAGAAGTGA
R:
TAGTTTGCGCACACTTGTGGT
Band lengths:
344-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains