BtaEX0027473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012646 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
Coordinates
chr1:56844455-56888235:+
Coord C1 exon
chr1:56844455-56844614
Coord A exon
chr1:56878513-56878973
Coord C2 exon
chr1:56887994-56888235
Length
461 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTTGCTTTGTGTAGGCT
3' ss Score
8.72
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGCTAGCATTTAGGAAGGTAAGAAGGAAACTCAGAATGGGGACCATCTGCTCCCCCAACCCCAGCGGGACAAAAACATTGGAGGTCTGCAATGCCGACTGGATGGCCTCACTTCCTTCTCACCTCCACAACGTCCCCCTTTCCAATCTGGCAATTCCAG
Seq A exon
GCTCCCATGATTCATTCAGCTACTGGGTAGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCCAGCGATCAAACGCCTTGCCAGGATCTCCTTCGTGAAGAAGGTCATGAAGAAATGGTCTGTGACTCAGAACCTGACATTCCGAGAACAGCTGGATGCCGGGATCCGTTACTTTGACCTGCGTGTGTCTTCCAAGCCAGGGGACGCCGACCAGGAAATCTACTTCATTCACGGGCTTTTTGGCATCAAGGTCTGGGATGGACTGATGGAGATCAACTCATTCCTCACACAGCACCCCCAAGAGATTGTCTTCCTGGATTTCAACCACTTCTACGCCATGGATGAGGCCCATCACAAACGCCTGATTCTCCGGATCCAGGAGGCCTTTGGAAGCAAGTTGTGCTCAGCCTGCAGTGTGGAGAGCATGACGCTGCAGAGGCTGTGGGAGAAGAAGTACCAG
Seq C2 exon
GTTCTTATCTTCTATCACTGTCCCTTCTACAAGCAATACGCCTTCCTGTGGCCTGGAAAGAAGATCCCAGCGCCCTGGGCCAATACCACGAGTGTGCGCAAACTCATCCTGTTCTTGGAGACCACGCTGAGTGAGCGCTCGCCCCATGGCTCCTTCCACGTGTCTCAAGCTATCCTCACACCCAGAGTGAAGACCATTGCCCGGGGCCTGGTTGGCGGCCTCAAGAACACACTGGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012646-'2-1,'2-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034908=Varsurf_PPLC=PU(53.3=44.4),PF0038814=PI-PLC-X=PU(5.3=16.7)
A:
PF034908=Varsurf_PPLC=PD(44.4=13.0),PF0038814=PI-PLC-X=FE(90.5=100)
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCATCTGCTCCCCCAA
R:
GACCAGTGTGTTCTTGAGGCC
Band lengths:
357-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development