HsaEX6057614 @ hg19
Exon Skipping
Gene
ENSG00000240891 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:26462]
Coordinates
chr3:111393507-111432975:+
Coord C1 exon
chr3:111393507-111394255
Coord A exon
chr3:111426773-111427233
Coord C2 exon
chr3:111432734-111432975
Length
461 bp
Sequences
Splice sites
3' ss Seq
ACCTGTATTCCTTTGTACAGGCT
3' ss Score
7.46
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGCTCCGGGTGTGGCTGCTCCTCGGACTTTCAGTTTATGTAAGATTTATCTCTAGGGGCCTACCTTCCCCCATCTCCAGAGGGGAACATAAGAAGTTTAACGGAGCTGGGACTGAGCAGATTAAGGGAGTGGAGCGGAGGCTGGGCCGGAGAGAGTGGGGACTGTGAGTGCTAGTGGGTAAGGATCCATCTGTTTGCCCCGTCCCCCAGCCAGAAAGGCATTTTGGAAAGACTGGCGTGGCAAGCGTCGCCCTGAAACGTCCACAGAGCCCAAGAAGTGATGATCACTGAGTGAGTGGCACTGGGCTGAGACTGGCCAGTTTGTTAACAACAGGGATGCTAGCAGTTAGGAAGGCCAGGAGGAAACTCAGGATGGGGACCATCTGCTCCCCCAACCCCAGCGGGACAAAGACATCATCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACCTCCCCCTTTCCAATCTGGCAATCCCAG
Seq A exon
GCTCACATGATTCATTCAGCTACTGGGTGGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTATCAAACGCCTCGCCAGGATCTCCTTGGTGAAGAAGCTAATGAAGAAGTGGTCTGTGACTCAGAACCTGACATTTCGAGAACAGCTGGAAGCTGGGATCCGCTACTTTGACCTGCGTGTGTCTTCCAAACCAGGGGATGCCGACCAGGAGATCTACTTCATCCATGGGCTTTTTGGCATCAAGGTCTGGGATGGGCTGATGGAAATTGACTCGTTTCTTACACAGCACCCCCAGGAGATTATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGACCCATCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGAAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGTTTGACGCTGCGAACTCTGTGGGAGAAGAACTGCCAG
Seq C2 exon
GTTCTTATTTTCTACCACTGTCCCTTCTACAAGCAGTACCCCTTCCTGTGGCCAGGAAAGAAGATTCCAGCGCCCTGGGCAAACACCACAAGTGTGCGCAAACTAATCCTCTTCTTGGAGACCACTCTGAGTGAGCGGGCCTCACGGGGCTCCTTCCATGTCTCCCAAGCGATCCTCACCCCCAGAGTGAAGACCATTGCCCGGGGCTTGGTTGGGGGCCTCAAGAACACGCTGGTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240891-'0-3,'0-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=FE(90.5=100)
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAGAGCCCAAGAAGTGA
R:
TAGTTTGCGCACACTTGTGGT
Band lengths:
344-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)