RnoEX0066825 @ rn6
Exon Skipping
Gene
ENSRNOG00000042289 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:RGD Symbol;Acc:1563504]
Coordinates
chr11:57207656-57247467:+
Coord C1 exon
chr11:57207656-57208376
Coord A exon
chr11:57238832-57239292
Coord C2 exon
chr11:57247226-57247467
Length
461 bp
Sequences
Splice sites
3' ss Seq
CCCTTTATTGCTTTATCCAGGCT
3' ss Score
7.25
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGTGTGGCTGTTCCTGGATGCTGTGGGTTTCAGTAAGGTTTGTATCTTCGGGCCTGCCTCCCCGGTCTCCAGAGAGGAACTAAGAAGTTTAACTGAGCAGAGACTGAGGAGATTAAAGGAGTGGATCTCAGAGGCAAGGCGGAGAGGGTGGGGACTGCGGGCGCAGCGGGCACAGCGGGCGGGGAAGCACCCATTTGACCCATCTCGGAGCTAGAAAAGAATCCTGAAAAGACTGGCATGACCCATGTGCTCTGAAATGTTTAGAGAGCCCCGAGCGGTGATGACCACAGAGTGAGTGGCACTAGGCTGAGCCTGTCTAATTCGTGGACAACAGGGATGCTTGCATTTAGAAAGGCCAGGAGGAAACTCAGGATGGGCACCATCTGCTCTCCCAATCCCAGCGGGACAAAGACAGCCTCGGAGGTCTGCAATGCTGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACGTCCCCCTTTCCAATCTGGCAATCCCAG
Seq A exon
GCTCCCATGATTCATTCAGCTACTGGGTAGACGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCAAACGCCTTGCCCGGATCTCCTTGGTAAAGAAATTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCCGGGAGCAGCTAGAGGCTGGGATCCGCTACTTTGACCTACGTGTGTCTTCTAAGCCCGGAGACACTGACCAGGAGATCTACTTCATCCATGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCATTCCTCACTCAGCATCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTACGCCATGGATGAGGCCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGTGTGGAAAGCATGACACTGCGGACCCTGTGGGAGAAGAAGTACCAG
Seq C2 exon
GTTCTCATTTTCTACCACTGTCCCTTCTACAAGCAATACCCATTCCTGTGGCCAGGGAAGAAGATCCCGGCACCCTGGGCAAACACCACGAGTGTGCAAAAGCTGATTCTCTTCTTGGAGACCACCTTGAGTGAGCGAGCCCCACGTGGGGCCTTCCATGTCTCCCAGGCCATCCTCACCCCAAGAGTGAAGACTATTGCCCGAGGCCTGGTGGGGGGCCTCAAGAACACACTAGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042289_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=FE(90.5=100)
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATCTGCTCTCCCAATC
R:
CTAGTGTGTTCTTGAGGCCCC
Band lengths:
358-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]