DreEX6095211 @ danRer10
Exon Skipping
Gene
ENSDARG00000058200 | PLCXD2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26462]
Coordinates
chr24:25031988-25041721:-
Coord C1 exon
chr24:25041413-25041721
Coord A exon
chr24:25038882-25039348
Coord C2 exon
chr24:25031988-25032229
Length
467 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTTTTACATTTCAGGCT
3' ss Score
9.79
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGAGTAGAAGAGCTCGCTCTCCATCTGCAGTTTGCCTCGCACATCCAGTGATGTTATAATGACTAAATCATTGTTATCTTGATGTAAATCCTGCATCGATGACCCTATTGACAATAATGATTTCGTGGAGAAGAACAATTGATGGATTAGCCTGGCCTGGATAAGTGCTGAATTGGCTTCGTGGATGTTGAAACGCTTAACTAGGGGAAATGAAGACGCGACCCACAGGAAACACCTCCAATGCTGACTGGATGGGCTCCCTGTGCCCTGCCCTCACGTCAATGCCCCTCAAACACCTGGCGGTTCCTG
Seq A exon
GCTCTCATGATTCCTTTAGTTTTTGGGTGGACGAACAAGCTCCAGTTGGTCCAGACCAGAAAGCGTATGTCAAACACCTGGCTGCGATATTCCGTTTTCTGGCCAAGAAGGTGATGAAGAAGTGGTCCATGACCCAGAACCTGACCTTCAGGGAACAGCTTGAGGGAGGCATTCGCTATTTCGACCTGCGGGTGTCCTCTAAACCAGGAGAAGCAGGCCACGAGATATACTTCATACACGGCCTGTTTGGACACAAAGTACGCGACGGCCTTAATGACATAAACAATTTTCTCAACATACACAAGAAAGAGGTTGTTTTTTTAGACTTCAATCATCATTATGCAATGGGAGAGGAACACCATCGTTACCTAATCAAGATGTTGCAGGACGTGTTCGGTCACAAGCTCTGCAGGATCGATGTGGTGGAGGAGATCACTCTGAATTATCTGTGGGAAAATAGATACCAG
Seq C2 exon
GTACTGGTGTTCTACCATCATCCGTCTGCTGAGGGCTGTCCTGTGATGTGGCCTGGTAGTAAAATTCCTGCACCGTGGGCCAATACTACAGACACCACCAAACTCATCCAGTTCCTGGAGACCACGCTGGGTGAAAGAGCCAAATACGGCAGCTTTCATGTGTCGCAGGCTATTCTAACCCCACGTGTCAAAACCATCGCCAGGGGCCTGGTACAGGGTCTGAGGAACTACCTGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058200-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.8=50.0)
A:
PF0038814=PI-PLC-X=FE(89.6=100)
C2:
PF0038814=PI-PLC-X=PD(3.5=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATTAGCCTGGCCTGGAT
R:
TGGGGTTAGAATAGCCTGCGA
Band lengths:
351-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]