MmuEX0035637 @ mm10
Exon Skipping
Gene
ENSMUSG00000087141 | Plcxd2
Description
phosphatidylinositol-specific phospholipase C, X domain containing 2 [Source:MGI Symbol;Acc:MGI:3647874]
Coordinates
chr16:45972109-46010218:-
Coord C1 exon
chr16:46009694-46010218
Coord A exon
chr16:45980236-45980696
Coord C2 exon
chr16:45972109-45972350
Length
461 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATTGCTTTATCCAGGCT
3' ss Score
6.93
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGTAGCTCCGGGTGTGGCTGTTCCTGGATGTTGTGGGTTTCAGGAAGGTTTGTATCTTCGGGCCTGCCTCCCCCGTCTCCAGAGGGGAACTAAGAAGTTTAACTGACCAGGGACTGAGGAGATTAAAGGAGTGGATCTCAGTGGCAAGGCGAAGAGGGTGGGGACTGCGGGAGCAGCAGGCAGGGGAGCACCTATTTGACCCATCTCCCAGCTAGAAAAGGATCTTGAAAAGACTGGCGTGACCCATGTGCTCTGAAATGTTTAGAGAGCCCCGAGCGGTGATGACCACAGAGTGAGTGGCACTAGACTGAGCCTGTCTAAATCGTGGACGACAGGGATGCTTGCATTTAGAAAGGCCAGAAGGAAACTCAGGATGGGTACCATCTGCTCTCCCAATCCCAGCGGGACAAAGACAGCCTCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCGCTCACCTCCACAACGTCCCCCTTTCCAATCTGGCAATCCCAG
Seq A exon
GCTCCCATGATTCATTCAGCTACTGGGTAGATGAAAAGTCCCCAGTGGGGCCTGACCAAACCCAAGCTGTCATACGCCTTGCCCGGATCTCCTTGGTGAAAAAGTTAATGAAGAAATGGTCTGTAACTCAGAACCTGACCTTCAGGGAGCAGCTGGAGGCTGGGATCCGCTACTTTGACCTACGGGTGTCTTCCAAGCCTGGAGACACTGACCAGGAGATCTACTTCATCCACGGGCTCTTTGGCATCAAGGTTTGGGATGGGTTGATGGAGATTGATGCCTTCCTCACTCAGCACCCTCAAGAGATCATCTTCCTGGATTTCAACCACTTCTATGCCATGGATGAGAGCCACCACAAATGCCTGGTTCTGCGGATCCAGGAGGCCTTTGGGAACAAGCTGTGCCCAGCCTGCAGCGTGGAAAGCATGACACTGCGGAGTCTGTGGGAGAAAAAGTACCAG
Seq C2 exon
GTTCTCATTTTCTACCACTGTCCCTTCTACAAGCAATACCCATTCCTGTGGCCAGGGAAGAAGATTCCGGCACCCTGGGCAAACACCACGAGTGTGCAGAAACTGATCCTCTTCTTGGAGACCACCCTGAGTGAGCGAGCTCCACGTGGGGCCTTCCATGTCTCCCAGGCCATCCTCACGCCAAGAGTGAAGACTATTGCTCGAGGCCTGGTGGGGGGCCTCAAGAACACACTAGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087141-'1-3,'1-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(5.3=16.4)
A:
PF0038814=PI-PLC-X=FE(90.5=100)
C2:
PF0038814=PI-PLC-X=PD(3.0=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAAAGACTGGCGTGACCC
R:
CAGGGTGCCGGAATCTTCTTC
Band lengths:
353-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types